If you are wanting client machines to connect to your web server and upload files to it. Them you should define a virtual file system that maps to physical file system, I do not recommend giving clients access to your real file system. The virtual file system can be DB driven where you store data such as a client information and file information such as virtual path (the path the client thinks they are accessing), and the physical path (were on disk the file is actually located). Then if a client then needs to access specific file from your web app then you can refernce it by the information that you have stored.
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