I just downloaded the new version, and it works fine. Only problem I have right now is that it doesn't quite fit on the page, so the toolbar is cut off. This was the same with the old version though.
Anyway, there is a javascript file that you can use to configure the editor, including the toolbar. The file is in the fckeditor folder in your solution explorer, and it is called fckconfig.
js. In there, you'll find a section like this:
FCKConfig.ToolbarSets["mywebsite"] = [
['Cut', 'Copy', 'PasteText', '-', 'Print', 'SpellCheck'],
['Undo', 'Redo', '-', 'Find', 'Replace', '-', 'SelectAll', 'RemoveFormat'],
['Bold', 'Italic', 'Underline', 'StrikeThrough', '-', 'Subscript', 'Superscript'],
['OrderedList', 'UnorderedList', '-', 'Outdent', 'Indent'],
['JustifyLeft', 'JustifyCenter', 'JustifyRight', 'JustifyFull'],
['Link', 'Unlink'],
['Image', 'Rule', 'Smiley', 'SpecialChar'],
['Style', 'FontFormat', 'FontName', 'FontSize'],
['TextColor', 'BGColor']
];
In the first square brackets, you set the name of your toolbarset, and it must be the same as the toolbarset property in the fckeditor control.
This is where you can configure your own toolbar version.