If the app is timing out, there are a couple of things you could try. You could try setting the script timeout to a higher value (in seconds), for example
Server.ScriptTimeout = 500
for up to 10 minutes. You can also do this in the web.config:
<configuration>
<system.web>
<httpRuntime maxRequestLength="8096" executionTimeout="500"/>
</system.web>
</configuration>
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