Just a thought here. I've been to many different development site forums and forums for other companies with brands and company colors, and most of them do realize that, on the web, you can base your site on your brand colors and still use other colors for usability and so on. As someone stated, are you going to change the text to white? The hyperlinks to yellow or red?

Incorporating the brand into a web site is important, it's also important to understand usability and not get too silly about it at the same time.